public marks

PUBLIC MARKS with tags science & unix

29 March 2006

Molecular Linux

by alcane
Molecular Biology related programs for Linux

15 March 2006

14 March 2006

Simloc

by alcane
detection of local similarities

Naccess

by alcane
Naccess is a stand alone program that calculates the accessible area of a molecule from a PDB (Protein Data Bank) format file.

GRAMM

by alcane
GRAMM is a program for protein docking.

DomainFinder

by alcane
DomainFinder is an interactive program for the determination and characterization of dynamical domains in proteins.

13 March 2006

xmolwt

by alcane
Calculate formula weight and percent of each element for a given formula.

TINKER Molecular Modeling Package

by alcane
A general purpose molecular modelling package

T-coffee

by alcane
A multiple DNA or protein sequence alignment package.

SeaView

by alcane
Multiple DNA/protein sequence alignment editor.

PovChem

by alcane
Simple yet powerful tool to generate POV from a PDB file

platon

by alcane
Tool for viewing molecular/crystallographic structures.

PAML

by alcane
Phylogenetic Analysis by Maximum Likelihood (PAML)

NAB

by alcane
A language for macromolecules.

Jalview

by alcane
A viewer and editor for multiple sequence alignments.

GRAPPA

by alcane
Genome Rearrangements Analysis under Parsimony and other Phylogenetic Algorithms

Garlic

by alcane & 1 other
Molecular viewer, editor and visualization program.

Chemeq : a chemical equation parser

by alcane
Outputs LaTeX code for chemical reaction

ARIADNE

by alcane
Programs to compare protein sequences and profiles

Chemtool

by alcane
Program for drawing organic molecules.

fastDNAml

by alcane
Program derived from Joseph Felsenstein's version 3.3 DNAML

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last mark : 29/03/2006 12:10