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PUBLIC MARKS with tags science & linux

May 2007

Scientific Linux - Welcome to Scientific Linux (SL)

by jdrsantos
SL is a Linux release put together by Fermilab, CERN, and various other labs and universities around the world. Its primary purpose is to reduce duplicated effort of the labs, and to have a common install base for the various experimenters.

October 2006

June 2006

April 2006

ToBiX

by alcane
Tools for bioinformatics - liveCD

March 2006

Molecular Linux

by alcane
Molecular Biology related programs for Linux

Simloc

by alcane
detection of local similarities

Naccess

by alcane
Naccess is a stand alone program that calculates the accessible area of a molecule from a PDB (Protein Data Bank) format file.

GRAMM

by alcane
GRAMM is a program for protein docking.

DomainFinder

by alcane
DomainFinder is an interactive program for the determination and characterization of dynamical domains in proteins.

xmolwt

by alcane
Calculate formula weight and percent of each element for a given formula.

TINKER Molecular Modeling Package

by alcane
A general purpose molecular modelling package

T-coffee

by alcane
A multiple DNA or protein sequence alignment package.

SeaView

by alcane
Multiple DNA/protein sequence alignment editor.

PovChem

by alcane
Simple yet powerful tool to generate POV from a PDB file

platon

by alcane
Tool for viewing molecular/crystallographic structures.

PAML

by alcane
Phylogenetic Analysis by Maximum Likelihood (PAML)

NAB

by alcane
A language for macromolecules.

Jalview

by alcane
A viewer and editor for multiple sequence alignments.

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